“CCPM3 July 2014” was one day workshops held at two places (IIIT Hyderabad and JNU Delhi on 30 July, 2014 both online and offline), was organized to familiarize the progressive prototype of the LIMS platform to its potential users. Invitations were sent in advance to most of the Plant Metabolomics network partners in India and to DBT experts. Each potential participant was contacted and given an option to choose a mode (online / offline) as well as place (Hyderabad/ New Delhi) of their convenience to participate in the workshop.
Inauguration and demonstration of the prototype.
All the online users and JNU to connect to host Skype ID: ccpm_iiit.
Inauguration by Prof. Indira Ghosh by connecting to IIIT Skype ID
Demonstration and Presentation at both venues: IIIT-H, Hyderabad and at JNU, Delhi
Registration categories & login
Unpublished project on “Arabidopsis thaliana” was selected for demonstration and following features of the portal are explained.
Overview of the Data source “AtMetExpress LC Phytochemical Atlas”
Metadata and raw data capture in a structured way on our LIMS portal
Bulk upload of metadata feature using filled sample metadata template
Data preprocessing module with Arabidopsis thaliana datasets
Details of preprocessed output results.
Data normalization of preprocessed results using various methods.
Hands on training for all the participants (assisted by project members) metabolomics.jnu.ac.in.
User documents were provided.
All the participants were given systems to upload their data.
Individual attention was given to each participant and doubts were clarified by all the volunteers.
The participants are trained with registration, login, add projects, add groups, add samples, add metadata, bulk upload of sample metadata, data preprocessing and data normalization.
Feed Back / Discussion session.
Apart from online feedback form on each and every page on the portal, questions were raised and deliberated more in detail.
Discussion with the online participants over Skype
Workshop Brochure: click here to view the brochure.
Invitation: click here to view the invitation letter
List of participants:
Dr. Shivashankar KS
Ms. Archana Koul
Mr. Deepak Sharma
Ms. Shivanjali Kotwal
Ms. Bhavana Bhan
Mr. Parivartan Vishal
Ms. Vinica Dhar
Ms. Archana Bhat
Mr. Munish Sharma
Ms. Komal Sambyal
Ms. Tanwi Sharma
Ms. Mehak Gupta
Prof. R.P Sharma
Mr. Kamal Tyagi
Mr. Rakesh Kumar
Mr. Reddaiah Bodanapu
Ms. Sapana Nongmaithem
Mr. Kapil Sharma
Ms. Aparna Srivasthav
Dr. Abhijit Mitra
Dr. Nita Parekh
Dr. Vikram Pudi
Dr. Geeta Y
Dr. Sulabha Sharma
Ms. Veena Shinde
Ms. Prashanthi Dharanipragada
Ms. Ramya G
Ms. Parshvika Sharma
Mr. Sandeep Kumar
Mr. Sumant Reddy
Mr. Dharma Teja
Mr. Antarip Halder
Ms. Sanchari Sircar
Mr. Broto Chakrabarty
Mr. Bipin Singh
Follow up action plan to contribute further to the project’s objectives:
The suggestions and feedback from the participants were formulated and categorized page wise.
Modified prototype will be available to all the workshop participants for testing with their real and already published data.
The workshop at both the places was successful. The value added suggestions had enabled us to improve the prototype development.