Upcoming Workshop

CCPM 7 Workshop on 10th April 2017. Registrations are open for online and physical session.

Click on Link: CCPM 7 Workshop 

CCPM version 4.4 release

We are pleased to announce the new release of CCPM v4.4.

What’s new?

  • NMR Module
    NMR Metabolite identification tool uses the open source metabohunter scripts for semi-automatic assignment of 1D NMR spectra of metabolites. The metabolite identification interface search two major publicly available NMR database (HMDB: Human Metabolome Database and MMCD: Madison Metabolomics Consortium Database) in background and display the result output from the selected database based on user input parameters. This tool for metabolite identification is based on spectra or peak lists with different search methods and with possibility for peak drift in a user defined spectral range.

  • Metabolite Correlation Edgelist
    This feature can be used to export metabolite correlation matrix as an edge list with user-defined cut-offs for correlation values. The edge list can be used as an input to network visualization softwares, such as Cytoscape. 

  • Multigroup
    Multigroup comparison allows user for the identification of differentially expressed metabolite features across multiple classes of data. multigroup analysis aims to identify differences between groups and reveal the diversity of metabolic patterns across different groups. 

  • Bulk Upload
    Meta data for multiple groups and its samples in a project can be uploaded as a single .csv file by the user. The corresponding file can be uploaded by clicking the button Choose File followed by clicking Upload Bulk Data. User can also upload Multiple Raw files with a group simultaneously using this Bulk Upload option. 

  • KEGG Module Integration
    The KEGG module can be used for mapping and visualizing a given set of metabolites on to KEGG pathways. The user can upload a list of metabolites along with fold-change/p values (optional) to retrieve the associated KEGG pathways and modules. In case no information is available for the given species, mapping can be done on the KEGG Reference Pathway. The fold-change/p values can be used for rendering the visualization of pathway maps.